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Preheat oven to 350 degrees.
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In a small bowl, combine flour, baking soda, baking powder, and salt. Set aside.
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In a large bowl, cream together butter and brown sugar.
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Add in honey, vanilla, and eat and beat together again.
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Add in milk and vanilla Greek yogurt and beat together again.
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Slowly add in flour mixture until well combined.
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Fold in the lime zest.
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In a greased or paper cup lined muffin tin fill each cup 3/4 of the way full.
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Bake for 15-20 minutes or until toothpick inserted comes out clean.
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While making, make the blueberry sauce. Take off heat to slightly cool.
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When cupcakes are done, remove from oven and let cool for 5 minutes.
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Remove the center of each cupcake with a small teaspoon (we used 1/4 tsp) carefully making sure not to go all the way down to the bottom.
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Fill each center with blueberry sauce.